species:   Rhsol
pid:       PID0585
parent:    Rhi-milR-56
paralog:   
locus:     KB317749.1:39175-39245
matures:   ['CGGCUUCAAGAACGGUACCGACG', 'UCGGCGUCGCUGUUGAUGCCAUG']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317749.1:39175-39245

2 out of bounds
14 alignments
14 proper strand
14 stranded perfect matches

        **************************  **************************         
CGUUCCCGGUCGGCUUCAAGAACGGUACCGACGGCUCCGUCGGCGUCGCUGUUGAUGCCAUGCGCGCAGCU
.(((.(((...(((.((((.(.(((..((((((....))))))..))).).)))).)))...)).).))).
----------CGGCUUCAAGAACGGUACCGACG-------------------------------------- l=23 a=0 c
---------------------------------------UCGGCGUCGCUGUUGAUGCCAUG--------- l=23 a=0 c*
----------CGGCUUCAAGAACGGUACCGACGG------------------------------------- l=24 a=4 ma
--------------------------------------GUCGGCGUCGCUGUUGAUGCCAUG--------- l=24 a=0 ma*

----CCCGGUCGGCUUCAAGAACGG---------------------------------------------- l=21 a=1 
--------GUCGGCUUCAAGAACGGUAC------------------------------------------- l=20 a=1 
---------UCGGCUUCAAGAACGGUACCGACGGCU----------------------------------- l=27 a=1 
----------CGGCUUCAAGAACGGUACCGACGG------------------------------------- l=24 a=4 (ma)
----------CGGCUUCAAGAACGGUACCGACGGC------------------------------------ l=25 a=2 
----------CGGCUUCAAGAACGGUACCGACGGCU----------------------------------- l=26 a=3 
----------CGGCUUCAAGAACGGUACCGACGGCUCC--------------------------------- l=28 a=1 
--------------UUCAAGAACGGUACCGACGGCUCC--------------------------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101100
fn-111
